Benjamin Haibe-Kains

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 23

Top Topics

Gene Expression

Clinical Decision Support

Multiple Myeloma

Machine Learning

Top Venues

Nature communications

Cancer research

Cancer discovery

Cancer immunology research

This page only lists publications with an associated author ORCID identifier.

Publications

Abdulazeez Salawu, Ben X Wang, Ming Han, Caryn Geady, Alya Heirali, Hal K Berman, Thomas D Pfister, Alberto Hernando-Calvo, Esmail Mutahar Al-Ezzi, Lee-Anne Stayner, Abha A Gupta, Olubukola Ayodele, Bernard Lam, Aaron Richard Hansen, Anna Spreafico, Philippe L Bedard, Marcus O Butler, Lisa Avery, Bryan Coburn, Benjamin Haibe-Kains, Lillian L Siu, Albiruni Abdul Razak
Safety, immunologic and clinical activity of Durvalumab in combination with Olaparib or Cediranib in advanced leiomyosarcoma: Results of the DAPPER clinical trial. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Michal Kazmierski, Mattea L Welch, Sejin Kim, Christopher McIntosh, Katrina Rey-McIntyre, Shao Hui Huang, Tirth Patel, Tony Tadic, Michael F Milosevic, Fei-Fei Liu, Adam Ryczkowski, Joanna Kazmierska, Zezhong Ye, Deborah Plana, Hugo J W L Aerts, Benjamin H Kann, Scott V Bratman, Andrew J Hope, Benjamin Haibe-Kains
Multi-institutional Prognostic Modeling in Head and Neck Cancer: Evaluating Impact and Generalizability of Deep Learning and Radiomics. Cancer research communications 3 (6) (2023)
Caryn Geady, Farnoosh Abbas-Aghababazadeh, Andres A Kohan, Scott M Schuetze, David B Shultz, Benjamin Haibe-Kains
Radiomic-Based Prediction of Lesion-Specific Systemic Treatment Response in Metastatic Disease. medRxiv : the preprint server for health sciences (2023)
Hossein Sharifi-Noghabi, Soheil Jahangiri-Tazehkand, Petr Smirnov, Casey Hon, Anthony Mammoliti, Sisira Kadambat Nair, Arvind Singh Mer, Martin Ester, Benjamin Haibe-Kains
Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models. Briefings in bioinformatics 22 (6) (2022)
Chewei Anderson Chang, Jayu Jen, Shaowen Jiang, Azin Sayad, Arvind Singh Mer, Kevin R Brown, Allison M L Nixon, Avantika Dhabaria, Kwan Ho Tang, David Venet, Christos Sotiriou, Jiehui Deng, Kwok-Kin Wong, Sylvia Adams, Peter Meyn, Adriana Heguy, Jane A Skok, Aristotelis Tsirigos, Beatrix Ueberheide, Jason Moffat, Abhyudai Singh, Benjamin Haibe-Kains, Alireza Khodadadi-Jamayran, Benjamin G Neel
Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer. Cancer discovery 12 (4) (2022)
Trevor J Pugh, Benjamin Haibe-Kains
REFLECTions on Combination Therapies Empowered by Data Sharing. Cancer discovery 12 (6) (2022)
Wail Ba-Alawi, Sisira Kadambat Nair, Bo Li, Anthony Mammoliti, Petr Smirnov, Arvind Singh Mer, Linda Z Penn, Benjamin Haibe-Kains
Bimodal Gene Expression in Patients with Cancer Provides Interpretable Biomarkers for Drug Sensitivity. Cancer research 82 (13) (2022)
Célia Jacoberger Foissac, Isabelle Cousineau, Yacine Bareche, David Allard, Pavel Chrobak, Bertrand Allard, Sandra Pommey, Nouredin Messaoudi, Yannic McNicoll, Geneviève Soucy, Secil Koseoglu, Ricard Masia, Andrew C Lake, Heewon Seo, Christopher B Eeles, Neha Rohatgi, Simon C Robson, Simon Turcotte, Benjamin Haibe-Kains, John Stagg
CD73 inhibits cGAS-STING and cooperates with CD39 to promote pancreatic cancer. Cancer immunology research (2022)
Arvind Singh Mer, Emily M Heath, Seyed Ali Madani Tonekaboni, Nergiz Dogan-Artun, Sisira Kadambat Nair, Alex Murison, Laura Garcia-Prat, Liran I Shlush, Rose Hurren, Veronique Voisin, Gary D Baider, Corey Nislow, Mattias Rantalainen, Soren Lehmann, Mark Gower, Cynthia J Guidos, Mathieu Lupien, John E Dick, Mark D Minden, Aaron David Schimmer, Benjamin Haibe-Kains
Biological and therapeutic implications of a unique subtype of NPM1 mutated AML. Nature communications 12 (1) (2021)
Arvind Singh Mer, Mark D Minden, Benjamin Haibe-Kains, Aaron David Schimmer
Novel subtypes of NPM1-mutated AML with distinct outcome. Molecular & cellular oncology 8 (4) (2021)
Janosch Ortmann, Ladislav Rampášek, Elijah Tai, Arvind Singh Mer, Ruoshi Shi, Erin L Stewart, Celine Mascaux, Aline Fares, Nhu-An Pham, Gangesh Beri, Christopher Eeles, Denis Tkachuk, Chantal Ho, Shingo Sakashita, Jessica Weiss, Xiaoqian Jiang, Geoffrey Liu, David W Cescon, Catherine A O'Brien, Sheng Guo, Ming Sound Tsao, Benjamin Haibe-Kains, Anna Goldenberg
Assessing therapy response in patient-derived xenografts. Science translational medicine 13 (620) (2021)
Nikta Feizi, Sisira Kadambat Nair, Petr Smirnov, Gangesh Beri, Christopher Eeles, Parinaz Nasr Esfahani, Minoru Nakano, Denis Tkachuk, Anthony Mammoliti, Evgeniya Gorobets, Arvind Singh Mer, Eva Lin, Yihong Yu, Scott Martin, Marc Hafner, Benjamin Haibe-Kains
PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis. Nucleic acids research (2021)
Anthony Mammoliti, Petr Smirnov, Minoru Nakano, Zhaleh Safikhani, Christopher Eeles, Heewon Seo, Sisira Kadambat Nair, Arvind S Mer, Ian Smith, Chantal Ho, Gangesh Beri, Rebecca Kusko, null null, Eva Lin, Yihong Yu, Scott Martin, Marc Hafner, Benjamin Haibe-Kains
Orchestrating and sharing large multimodal data for transparent and reproducible research. Nature communications 12 (1) (2021)
Geneviève Deblois, Seyed Ali Madani Tonekaboni, Giacomo Grillo, Constanza Martinez, Yunchi Ingrid Kao, Felicia Tai, Ilias Ettayebi, Anne-Marie Fortier, Paul Savage, Alexandra N Fedor, Xiaojing Liu, Paul Guilhamon, Evelyne Lima-Fernandes, Alex Murison, Hellen Kuasne, Wail Ba-Alawi, David W Cescon, Cheryl H Arrowsmith, Daniel D De Carvalho, Benjamin Haibe-Kains, Jason W Locasale, Morag Park, Mathieu Lupien
Epigenetic Switch-Induced Viral Mimicry Evasion in Chemotherapy-Resistant Breast Cancer. Cancer discovery 10 (9) (2020)
Benjamin Haibe-Kains, George Alexandru Adam, Ahmed Hosny, Farnoosh Khodakarami, null null, Levi Waldron, Bo Wang, Chris McIntosh, Anna Goldenberg, Anshul Kundaje, Casey S Greene, Tamara Broderick, Michael M Hoffman, Jeffrey T Leek, Keegan Korthauer, Wolfgang Huber, Alvis Brazma, Joelle Pineau, Robert Tibshirani, Trevor Hastie, John P A Ioannidis, John Quackenbush, Hugo J W L Aerts
Transparency and reproducibility in artificial intelligence. Nature 586 (7829) (2020)
Michael St Paul, Samuel D Saibil, Scott C Lien, SeongJun Han, Azin Sayad, David T Mulder, Carlos R Garcia-Batres, Alisha R Elford, Kavita Israni-Winger, Céline Robert-Tissot, Michael Zon, Sarah Rachel Katz, Patricia A Shaw, Blaise A Clarke, Marcus Q Bernardini, Linh T Nguyen, Benjamin Haibe-Kains, Trevor J Pugh, Pamela S Ohashi
IL6 Induces an IL22+ CD8+ T-cell Subset with Potent Antitumor Function. Cancer immunology research 8 (3) (2020)
Joseph Longo, Petr Smirnov, Zhihua Li, Emily Branchard, Jenna E van Leeuwen, Jonathan D Licht, Benjamin Haibe-Kains, David William Andrews, Jonathan J Keats, Trevor J Pugh, Suzanne Trudel, Linda Z Penn
The mevalonate pathway is an actionable vulnerability of t(4;14)-positive multiple myeloma. Leukemia 35 (3) (2020)
Arvind S Mer, Wail Ba-Alawi, Petr Smirnov, Yi X Wang, Ben Brew, Janosch Ortmann, Ming Sound Tsao, David W Cescon, Anna Goldenberg, Benjamin Haibe-Kains
Integrative Pharmacogenomics Analysis of Patient-Derived Xenografts. Cancer research 79 (17) (2019)
Ruoshi Shi, Nikolina Radulovich, Christine Ng, Geoffrey Liu, Hirotsugu Notsuda, Michael Cabanero, Sebastiao N Martins-Filho, Vibha Raghavan, Quan Li, Arvind Singh Mer, Joshua C Rosen, Ming Li, Yu-Hui Wang, Laura Tamblyn, Nhu-An Pham, Benjamin Haibe-Kains, Nadeem Moghal, Ming Sound Tsao
Organoid Cultures as Preclinical Models of Non-Small Cell Lung Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (5) (2019)
Venkata Sk Manem, Meghan Lambie, Ian Smith, Petr Smirnov, Victor Kofia, Mark Freeman, Marianne Koritzinsky, Mohamed E Abazeed, Benjamin Haibe-Kains, Scott V Bratman
Modeling Cellular Response in Large-Scale Radiogenomic Databases to Advance Precision Radiotherapy. Cancer research 79 (24) (2019)
Anthony Mammoliti, Petr Smirnov, Zhaleh Safikhani, Wail Ba-Alawi, Benjamin Haibe-Kains
Creating reproducible pharmacogenomic analysis pipelines. Scientific data 6 (1) (2019)
Zhaleh Safikhani, Petr Smirnov, Kelsie L Thu, Jennifer Silvester, Nehme El-Hachem, Rene Quevedo, Mathieu Lupien, Tak W Mak, David Cescon, Benjamin Haibe-Kains
Author Correction: Gene isoforms as expression-based biomarkers predictive of drug response in vitro. Nature communications 9 (1) (2018)
Zhaleh Safikhani, Petr Smirnov, Kelsie L Thu, Jennifer Silvester, Nehme El-Hachem, Rene Quevedo, Mathieu Lupien, Tak W Mak, David Cescon, Benjamin Haibe-Kains
Gene isoforms as expression-based biomarkers predictive of drug response in vitro. Nature communications 8 (1) (2017)
Bo Wang, Aziz M Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg
Similarity network fusion for aggregating data types on a genomic scale. Nature methods 11 (3) (2014)